However, if you compare apples and oranges you may not expect similarity as the early lesions in EAE full ofT cells and limited demyelination is not that similar to a demyelinated plaque within an active macrophage filled lesions. Many of the expressed genes are found in certain cell types and so they crop up in microarray just because the cell is there.
However some will use this to say how different animals are from humans, but as it is open access you can read it and make your own mind